BioASQ Participants Area
Test Results for Task 5a
The evaluation measures indicating the performance of the systems that submitted results are presented below. The evaluation is incremental; as new MeSH become available the tables are updated.+ Dry Run 1
Annotated articles:11372/13000
Flat Measures
| System | MiF | EBP | EBR | EBF | MaP | MaR | MaF | MiP | MiR | Acc. |
|---|---|---|---|---|---|---|---|---|---|---|
| MTI First Line Index | 0.6329 | 0.6857 | 0.6080 | 0.6233 | 0.6516 | 0.5606 | 0.5422 | 0.6764 | 0.5946 | 0.4721 |
| Default MTI | 0.6361 | 0.6407 | 0.6587 | 0.6281 | 0.6104 | 0.5978 | 0.5582 | 0.6294 | 0.6429 | 0.4749 |
Hierarchical Measures
| System | LCA-F | HiP | HiR | HiF | LCA-P | LCA-R |
|---|---|---|---|---|---|---|
| MTI First Line Index | 0.5035 | 0.7954 | 0.7055 | 0.7268 | 0.5551 | 0.4882 |
| Default MTI | 0.5102 | 0.7594 | 0.7538 | 0.7366 | 0.5281 | 0.5238 |
+ Dry Run 2
Annotated articles:6179/6326
Flat Measures
| System | MiF | EBP | EBR | EBF | MaP | MaR | MaF | MiP | MiR | Acc. |
|---|---|---|---|---|---|---|---|---|---|---|
| MTI First Line Index | 0.6108 | 0.6727 | 0.5861 | 0.6043 | 0.6242 | 0.5350 | 0.5144 | 0.6620 | 0.5669 | 0.4506 |
| Default MTI | 0.6190 | 0.6317 | 0.6376 | 0.6132 | 0.5812 | 0.5785 | 0.5354 | 0.6211 | 0.6169 | 0.4591 |
| MZ1 | 0.4745 | 0.6931 | 0.3881 | 0.4632 | 0.4074 | 0.1988 | 0.2048 | 0.6559 | 0.3717 | 0.3179 |
Hierarchical Measures
| System | LCA-F | HiP | HiR | HiF | LCA-P | LCA-R |
|---|---|---|---|---|---|---|
| MTI First Line Index | 0.4916 | 0.7870 | 0.6916 | 0.7142 | 0.5471 | 0.4740 |
| Default MTI | 0.5039 | 0.7508 | 0.7413 | 0.7259 | 0.5254 | 0.5139 |
| MZ1 | 0.3600 | 0.7892 | 0.4669 | 0.5468 | 0.5194 | 0.3056 |
+ Test batch 1, week 1
Annotated articles:6661/6880
Flat Measures
| System | MiF | EBP | EBR | EBF | MaP | MaR | MaF | MiP | MiR | Acc. |
|---|---|---|---|---|---|---|---|---|---|---|
| MTI First Line Index | 0.6121 | 0.6687 | 0.5834 | 0.6011 | 0.6248 | 0.5377 | 0.5164 | 0.6618 | 0.5692 | 0.4473 |
| Default MTI | 0.6226 | 0.6347 | 0.6343 | 0.6134 | 0.5889 | 0.5775 | 0.5379 | 0.6275 | 0.6177 | 0.4592 |
| auth1 | 0.6254 | 0.6160 | 0.6440 | 0.6125 | 0.6057 | 0.5136 | 0.4970 | 0.6219 | 0.6291 | 0.4572 |
| auth2 | 0.6324 | 0.6226 | 0.6502 | 0.6188 | 0.6133 | 0.5004 | 0.4832 | 0.6288 | 0.6361 | 0.4643 |
| auth3 | 0.6335 | 0.6485 | 0.6236 | 0.6182 | 0.6317 | 0.4817 | 0.4733 | 0.6562 | 0.6123 | 0.4643 |
| Search system 1 | 0.2707 | 0.2650 | 0.3065 | 0.2683 | 0.4201 | 0.4192 | 0.3510 | 0.2505 | 0.2944 | 0.1616 |
| Search system 2 | 0.2570 | 0.2409 | 0.3111 | 0.2555 | 0.4039 | 0.4235 | 0.3465 | 0.2255 | 0.2988 | 0.1524 |
| Search system 3 | 0.2103 | 0.2941 | 0.1801 | 0.2064 | 0.4012 | 0.2578 | 0.2572 | 0.2851 | 0.1665 | 0.1219 |
| Search system 4 | 0.2430 | 0.2094 | 0.3595 | 0.2468 | 0.2936 | 0.4872 | 0.3661 | 0.1865 | 0.3485 | 0.1457 |
| Search system 5 | 0.2559 | 0.2297 | 0.3349 | 0.2562 | 0.3136 | 0.4583 | 0.3629 | 0.2112 | 0.3244 | 0.1523 |
| MZ1 | 0.4649 | 0.4888 | 0.4863 | 0.4595 | 0.5764 | 0.1913 | 0.2019 | 0.4678 | 0.4621 | 0.3101 |
| DeepMeSH1 | 0.6607 | 0.7099 | 0.6346 | 0.6504 | 0.6687 | 0.5312 | 0.5283 | 0.7099 | 0.6178 | 0.4994 |
| DeepMeSH2 | 0.6578 | 0.7240 | 0.6211 | 0.6494 | 0.6827 | 0.5166 | 0.5182 | 0.7280 | 0.5999 | 0.4984 |
| DeepMeSH3 | 0.6498 | 0.6978 | 0.6238 | 0.6386 | 0.6465 | 0.5081 | 0.5033 | 0.6991 | 0.6070 | 0.4865 |
| DeepMeSH4 | 0.6428 | 0.7083 | 0.6052 | 0.6335 | 0.6557 | 0.4791 | 0.4821 | 0.7139 | 0.5846 | 0.4809 |
| DeepMeSH5 | 0.6607 | 0.7099 | 0.6346 | 0.6504 | 0.6687 | 0.5312 | 0.5283 | 0.7099 | 0.6178 | 0.4994 |
Hierarchical Measures
| System | LCA-F | HiP | HiR | HiF | LCA-P | LCA-R |
|---|---|---|---|---|---|---|
| MTI First Line Index | 0.4888 | 0.7844 | 0.6886 | 0.7113 | 0.5447 | 0.4711 |
| Default MTI | 0.5026 | 0.7552 | 0.7373 | 0.7258 | 0.5265 | 0.5101 |
| auth1 | 0.5041 | 0.7430 | 0.7439 | 0.7250 | 0.5203 | 0.5158 |
| auth2 | 0.5081 | 0.7489 | 0.7452 | 0.7287 | 0.5254 | 0.5190 |
| auth3 | 0.5039 | 0.7732 | 0.7178 | 0.7256 | 0.5398 | 0.4979 |
| Search system 1 | 0.2980 | 0.5086 | 0.5359 | 0.4994 | 0.2954 | 0.3332 |
| Search system 2 | 0.2936 | 0.4923 | 0.5413 | 0.4929 | 0.2848 | 0.3372 |
| Search system 3 | 0.2602 | 0.5733 | 0.3739 | 0.4243 | 0.3450 | 0.2320 |
| Search system 4 | 0.2823 | 0.4368 | 0.5998 | 0.4819 | 0.2476 | 0.3757 |
| Search system 5 | 0.2864 | 0.4564 | 0.5805 | 0.4885 | 0.2597 | 0.3605 |
| MZ1 | 0.3872 | 0.6450 | 0.6050 | 0.5943 | 0.4274 | 0.3906 |
| DeepMeSH1 | 0.5269 | 0.8156 | 0.7234 | 0.7472 | 0.5787 | 0.5089 |
| DeepMeSH2 | 0.5234 | 0.8261 | 0.7080 | 0.7432 | 0.5871 | 0.4966 |
| DeepMeSH3 | 0.5183 | 0.8089 | 0.7142 | 0.7387 | 0.5712 | 0.5002 |
| DeepMeSH4 | 0.5111 | 0.8186 | 0.6950 | 0.7323 | 0.5758 | 0.4840 |
| DeepMeSH5 | 0.5269 | 0.8156 | 0.7234 | 0.7472 | 0.5787 | 0.5089 |
+ Test batch 1, week 2
Annotated articles:6599/7457
Flat Measures
| System | MiF | EBP | EBR | EBF | MaP | MaR | MaF | MiP | MiR | Acc. |
|---|---|---|---|---|---|---|---|---|---|---|
| MTI First Line Index | 0.6125 | 0.6703 | 0.5854 | 0.6025 | 0.6266 | 0.5433 | 0.5199 | 0.6598 | 0.5715 | 0.4488 |
| Default MTI | 0.6230 | 0.6358 | 0.6390 | 0.6161 | 0.5844 | 0.5833 | 0.5386 | 0.6231 | 0.6230 | 0.4623 |
| auth1 | 0.6272 | 0.6219 | 0.6456 | 0.6165 | 0.6150 | 0.5117 | 0.4979 | 0.6235 | 0.6310 | 0.4611 |
| auth2 | 0.6346 | 0.6289 | 0.6523 | 0.6232 | 0.6250 | 0.4996 | 0.4849 | 0.6309 | 0.6384 | 0.4684 |
| auth3 | 0.6355 | 0.6565 | 0.6251 | 0.6229 | 0.6446 | 0.4813 | 0.4750 | 0.6592 | 0.6135 | 0.4684 |
| Search system 1 | 0.2752 | 0.2699 | 0.3108 | 0.2719 | 0.4233 | 0.4245 | 0.3567 | 0.2546 | 0.2994 | 0.1640 |
| Search system 2 | 0.2612 | 0.2449 | 0.3154 | 0.2589 | 0.4080 | 0.4288 | 0.3521 | 0.2291 | 0.3038 | 0.1545 |
| Search system 3 | 0.2127 | 0.2983 | 0.1809 | 0.2084 | 0.4071 | 0.2599 | 0.2605 | 0.2902 | 0.1678 | 0.1237 |
| Search system 4 | 0.2469 | 0.2113 | 0.3665 | 0.2498 | 0.2971 | 0.4935 | 0.3733 | 0.1893 | 0.3549 | 0.1476 |
| Search system 5 | 0.2587 | 0.2313 | 0.3400 | 0.2585 | 0.3156 | 0.4621 | 0.3674 | 0.2131 | 0.3290 | 0.1538 |
| MZ1 | 0.5546 | 0.5565 | 0.5610 | 0.5390 | 0.5302 | 0.3582 | 0.3272 | 0.5566 | 0.5527 | 0.3841 |
| DeepMeSH1 | 0.6620 | 0.7133 | 0.6366 | 0.6533 | 0.6732 | 0.5345 | 0.5307 | 0.7091 | 0.6208 | 0.5019 |
| DeepMeSH2 | 0.6644 | 0.7011 | 0.6496 | 0.6563 | 0.6635 | 0.5524 | 0.5415 | 0.6995 | 0.6326 | 0.5050 |
| DeepMeSH3 | 0.6524 | 0.7027 | 0.6270 | 0.6433 | 0.6507 | 0.5159 | 0.5112 | 0.6994 | 0.6113 | 0.4905 |
| DeepMeSH4 | 0.6490 | 0.6808 | 0.6371 | 0.6401 | 0.6267 | 0.5192 | 0.5092 | 0.6806 | 0.6202 | 0.4867 |
| DeepMeSH5 | 0.6594 | 0.7287 | 0.6220 | 0.6522 | 0.6905 | 0.5246 | 0.5265 | 0.7289 | 0.6020 | 0.5010 |
| Sequencer | 0.0001 | 0.0002 | 0.0001 | 0.0001 | 0.0002 | 0.0001 | 0.0001 | 0.0002 | 0.0001 | 0.0001 |
Hierarchical Measures
| System | LCA-F | HiP | HiR | HiF | LCA-P | LCA-R |
|---|---|---|---|---|---|---|
| MTI First Line Index | 0.4918 | 0.7868 | 0.6907 | 0.7130 | 0.5457 | 0.4758 |
| Default MTI | 0.5073 | 0.7559 | 0.7428 | 0.7289 | 0.5275 | 0.5188 |
| auth1 | 0.5099 | 0.7493 | 0.7467 | 0.7300 | 0.5253 | 0.5219 |
| auth2 | 0.5140 | 0.7555 | 0.7492 | 0.7345 | 0.5304 | 0.5251 |
| auth3 | 0.5103 | 0.7791 | 0.7198 | 0.7298 | 0.5464 | 0.5042 |
| Search system 1 | 0.2985 | 0.5102 | 0.5369 | 0.4995 | 0.2955 | 0.3359 |
| Search system 2 | 0.2940 | 0.4940 | 0.5426 | 0.4932 | 0.2846 | 0.3401 |
| Search system 3 | 0.2617 | 0.5779 | 0.3719 | 0.4240 | 0.3480 | 0.2332 |
| Search system 4 | 0.2830 | 0.4366 | 0.6030 | 0.4819 | 0.2474 | 0.3811 |
| Search system 5 | 0.2870 | 0.4557 | 0.5828 | 0.4880 | 0.2594 | 0.3649 |
| MZ1 | 0.4472 | 0.6966 | 0.6670 | 0.6596 | 0.4729 | 0.4530 |
| DeepMeSH1 | 0.5311 | 0.8176 | 0.7260 | 0.7496 | 0.5803 | 0.5158 |
| DeepMeSH2 | 0.5359 | 0.8088 | 0.7387 | 0.7537 | 0.5760 | 0.5264 |
| DeepMeSH3 | 0.5227 | 0.8108 | 0.7173 | 0.7416 | 0.5722 | 0.5072 |
| DeepMeSH4 | 0.5234 | 0.7960 | 0.7298 | 0.7432 | 0.5622 | 0.5150 |
| DeepMeSH5 | 0.5289 | 0.8292 | 0.7107 | 0.7462 | 0.5897 | 0.5042 |
| Sequencer | 0.1002 | 0.1506 | 0.0906 | 0.1008 | 0.1497 | 0.0877 |
+ Test batch 1, week 3
Annotated articles:9656/10319
Flat Measures
| System | MiF | EBP | EBR | EBF | MaP | MaR | MaF | MiP | MiR | Acc. |
|---|---|---|---|---|---|---|---|---|---|---|
| MTI First Line Index | 0.6223 | 0.6807 | 0.5917 | 0.6123 | 0.6475 | 0.5496 | 0.5318 | 0.6728 | 0.5788 | 0.4610 |
| Default MTI | 0.6342 | 0.6432 | 0.6496 | 0.6266 | 0.6097 | 0.5894 | 0.5509 | 0.6343 | 0.6340 | 0.4749 |
| auth1 | 0.6223 | 0.6126 | 0.6429 | 0.6112 | 0.6213 | 0.5123 | 0.5010 | 0.6157 | 0.6291 | 0.4548 |
| auth2 | 0.6307 | 0.6210 | 0.6512 | 0.6194 | 0.6342 | 0.4977 | 0.4865 | 0.6240 | 0.6375 | 0.4637 |
| auth3 | 0.6288 | 0.6514 | 0.6166 | 0.6167 | 0.6547 | 0.4768 | 0.4737 | 0.6550 | 0.6046 | 0.4615 |
| Search system 1 | 0.2843 | 0.2756 | 0.3175 | 0.2810 | 0.4391 | 0.4267 | 0.3576 | 0.2637 | 0.3083 | 0.1709 |
| Search system 2 | 0.2699 | 0.2502 | 0.3219 | 0.2677 | 0.4242 | 0.4305 | 0.3529 | 0.2374 | 0.3126 | 0.1611 |
| Search system 3 | 0.2143 | 0.2986 | 0.1816 | 0.2094 | 0.4172 | 0.2601 | 0.2620 | 0.2923 | 0.1691 | 0.1243 |
| Search system 4 | 0.2553 | 0.2155 | 0.3740 | 0.2583 | 0.3114 | 0.4954 | 0.3723 | 0.1964 | 0.3644 | 0.1536 |
| Search system 5 | 0.2672 | 0.2356 | 0.3475 | 0.2670 | 0.3305 | 0.4670 | 0.3694 | 0.2207 | 0.3384 | 0.1599 |
| DeepMeSH1 | 0.6615 | 0.7145 | 0.6347 | 0.6531 | 0.6804 | 0.5373 | 0.5367 | 0.7106 | 0.6188 | 0.5016 |
| DeepMeSH2 | 0.6639 | 0.7024 | 0.6482 | 0.6561 | 0.6710 | 0.5539 | 0.5467 | 0.7000 | 0.6313 | 0.5049 |
| DeepMeSH3 | 0.6478 | 0.6991 | 0.6206 | 0.6382 | 0.6597 | 0.5102 | 0.5098 | 0.6965 | 0.6054 | 0.4847 |
| DeepMeSH4 | 0.6439 | 0.6766 | 0.6309 | 0.6349 | 0.6330 | 0.5154 | 0.5081 | 0.6761 | 0.6146 | 0.4807 |
| DeepMeSH5 | 0.6577 | 0.7281 | 0.6197 | 0.6507 | 0.6983 | 0.5243 | 0.5297 | 0.7273 | 0.6002 | 0.4992 |
Hierarchical Measures
| System | LCA-F | HiP | HiR | HiF | LCA-P | LCA-R |
|---|---|---|---|---|---|---|
| MTI First Line Index | 0.4981 | 0.7932 | 0.6965 | 0.7212 | 0.5517 | 0.4805 |
| Default MTI | 0.5140 | 0.7609 | 0.7497 | 0.7362 | 0.5332 | 0.5246 |
| auth1 | 0.4986 | 0.7396 | 0.7432 | 0.7243 | 0.5125 | 0.5113 |
| auth2 | 0.5045 | 0.7481 | 0.7470 | 0.7305 | 0.5191 | 0.5167 |
| auth3 | 0.4982 | 0.7754 | 0.7089 | 0.7229 | 0.5363 | 0.4897 |
| Search system 1 | 0.3025 | 0.5114 | 0.5423 | 0.5059 | 0.2984 | 0.3375 |
| Search system 2 | 0.2983 | 0.4953 | 0.5478 | 0.4997 | 0.2880 | 0.3417 |
| Search system 3 | 0.2602 | 0.5693 | 0.3697 | 0.4206 | 0.3472 | 0.2310 |
| Search system 4 | 0.2878 | 0.4368 | 0.6102 | 0.4881 | 0.2509 | 0.3823 |
| Search system 5 | 0.2921 | 0.4562 | 0.5902 | 0.4944 | 0.2635 | 0.3667 |
| DeepMeSH1 | 0.5255 | 0.8160 | 0.7229 | 0.7476 | 0.5765 | 0.5079 |
| DeepMeSH2 | 0.5296 | 0.8070 | 0.7362 | 0.7520 | 0.5714 | 0.5184 |
| DeepMeSH3 | 0.5124 | 0.8067 | 0.7117 | 0.7370 | 0.5635 | 0.4950 |
| DeepMeSH4 | 0.5130 | 0.7925 | 0.7239 | 0.7385 | 0.5530 | 0.5037 |
| DeepMeSH5 | 0.5205 | 0.8270 | 0.7076 | 0.7438 | 0.5834 | 0.4943 |
+ Test batch 1, week 4
Annotated articles:4697/7523
Flat Measures
| System | MiF | EBP | EBR | EBF | MaP | MaR | MaF | MiP | MiR | Acc. |
|---|---|---|---|---|---|---|---|---|---|---|
| MTI First Line Index | 0.6180 | 0.6650 | 0.5918 | 0.6050 | 0.6119 | 0.5509 | 0.5252 | 0.6575 | 0.5829 | 0.4526 |
| Default MTI | 0.6216 | 0.6247 | 0.6411 | 0.6119 | 0.5703 | 0.5891 | 0.5428 | 0.6148 | 0.6286 | 0.4594 |
| MZ1 | 0.4940 | 0.6352 | 0.4053 | 0.4774 | 0.6168 | 0.2575 | 0.2551 | 0.6495 | 0.3985 | 0.3299 |
| DeepMeSH1 | 0.6633 | 0.7058 | 0.6416 | 0.6525 | 0.6552 | 0.5462 | 0.5374 | 0.7025 | 0.6282 | 0.5025 |
| DeepMeSH2 | 0.6655 | 0.6923 | 0.6584 | 0.6563 | 0.6410 | 0.5639 | 0.5471 | 0.6895 | 0.6432 | 0.5059 |
| DeepMeSH3 | 0.6514 | 0.6924 | 0.6300 | 0.6399 | 0.6360 | 0.5191 | 0.5095 | 0.6898 | 0.6170 | 0.4877 |
| DeepMeSH4 | 0.6474 | 0.6672 | 0.6431 | 0.6369 | 0.6076 | 0.5267 | 0.5095 | 0.6671 | 0.6289 | 0.4839 |
| DeepMeSH5 | 0.6617 | 0.7200 | 0.6300 | 0.6527 | 0.6660 | 0.5318 | 0.5280 | 0.7198 | 0.6122 | 0.5024 |
| Sequencer | 0.0941 | 0.0935 | 0.0954 | 0.0883 | 0.0014 | 0.0013 | 0.0010 | 0.0920 | 0.0964 | 0.0494 |
| RACAI-DumbClassifier | 0.2470 | 0.7319 | 0.1433 | 0.2262 | 0.5979 | 0.0012 | 0.0015 | 0.7681 | 0.1472 | 0.1381 |
Hierarchical Measures
| System | LCA-F | HiP | HiR | HiF | LCA-P | LCA-R |
|---|---|---|---|---|---|---|
| MTI First Line Index | 0.4876 | 0.7813 | 0.6980 | 0.7156 | 0.5365 | 0.4748 |
| Default MTI | 0.5002 | 0.7454 | 0.7492 | 0.7270 | 0.5158 | 0.5161 |
| MZ1 | 0.3763 | 0.7716 | 0.4894 | 0.5745 | 0.5095 | 0.3182 |
| DeepMeSH1 | 0.5235 | 0.8090 | 0.7319 | 0.7494 | 0.5693 | 0.5115 |
| DeepMeSH2 | 0.5284 | 0.7981 | 0.7480 | 0.7543 | 0.5623 | 0.5249 |
| DeepMeSH3 | 0.5126 | 0.8003 | 0.7215 | 0.7394 | 0.5581 | 0.5010 |
| DeepMeSH4 | 0.5126 | 0.7804 | 0.7355 | 0.7396 | 0.5440 | 0.5105 |
| DeepMeSH5 | 0.5211 | 0.8191 | 0.7196 | 0.7471 | 0.5762 | 0.5016 |
| Sequencer | 0.1673 | 0.2326 | 0.2264 | 0.2152 | 0.1795 | 0.1730 |
| RACAI-DumbClassifier | 0.1580 | 0.7852 | 0.1266 | 0.2113 | 0.4559 | 0.0983 |
+ Test batch 1, week 5
Annotated articles:6659/7940
Flat Measures
| System | MiF | EBP | EBR | EBF | MaP | MaR | MaF | MiP | MiR | Acc. |
|---|---|---|---|---|---|---|---|---|---|---|
| MTI First Line Index | 0.6150 | 0.6753 | 0.5894 | 0.6088 | 0.6376 | 0.5331 | 0.5172 | 0.6658 | 0.5715 | 0.4556 |
| Default MTI | 0.6267 | 0.6386 | 0.6437 | 0.6212 | 0.5967 | 0.5721 | 0.5362 | 0.6299 | 0.6235 | 0.4684 |
| auth1 | 0.6241 | 0.6122 | 0.6484 | 0.6133 | 0.6152 | 0.5095 | 0.4969 | 0.6167 | 0.6317 | 0.4571 |
| auth2 | 0.6317 | 0.6200 | 0.6562 | 0.6209 | 0.6257 | 0.4970 | 0.4836 | 0.6243 | 0.6394 | 0.4653 |
| auth3 | 0.6319 | 0.6498 | 0.6263 | 0.6205 | 0.6440 | 0.4763 | 0.4713 | 0.6543 | 0.6110 | 0.4654 |
| auth4 | 0.6204 | 0.6184 | 0.6374 | 0.6073 | 0.6492 | 0.4812 | 0.4787 | 0.6142 | 0.6267 | 0.4514 |
| auth5 | 0.6321 | 0.6249 | 0.6514 | 0.6209 | 0.6142 | 0.5125 | 0.4991 | 0.6294 | 0.6349 | 0.4655 |
| Search system 1 | 0.2781 | 0.2688 | 0.3156 | 0.2758 | 0.4284 | 0.4115 | 0.3476 | 0.2581 | 0.3014 | 0.1670 |
| Search system 2 | 0.2642 | 0.2436 | 0.3199 | 0.2623 | 0.4135 | 0.4152 | 0.3435 | 0.2326 | 0.3057 | 0.1571 |
| Search system 3 | 0.2140 | 0.2933 | 0.1859 | 0.2102 | 0.3970 | 0.2484 | 0.2493 | 0.2876 | 0.1704 | 0.1250 |
| Search system 4 | 0.2497 | 0.2105 | 0.3679 | 0.2525 | 0.2997 | 0.4758 | 0.3629 | 0.1928 | 0.3545 | 0.1496 |
| Search system 5 | 0.2621 | 0.2312 | 0.3445 | 0.2625 | 0.3183 | 0.4487 | 0.3593 | 0.2171 | 0.3306 | 0.1567 |
| MZ1 | 0.5502 | 0.6075 | 0.5206 | 0.5387 | 0.5932 | 0.3032 | 0.3014 | 0.6047 | 0.5048 | 0.3833 |
| DeepMeSH1 | 0.6629 | 0.7154 | 0.6366 | 0.6550 | 0.6809 | 0.5266 | 0.5272 | 0.7138 | 0.6187 | 0.5037 |
| DeepMeSH2 | 0.6633 | 0.7014 | 0.6496 | 0.6567 | 0.6651 | 0.5417 | 0.5356 | 0.7010 | 0.6294 | 0.5054 |
| DeepMeSH3 | 0.6503 | 0.7030 | 0.6227 | 0.6414 | 0.6604 | 0.5025 | 0.5036 | 0.7021 | 0.6056 | 0.4884 |
| DeepMeSH4 | 0.6464 | 0.6797 | 0.6338 | 0.6381 | 0.6328 | 0.5093 | 0.5032 | 0.6813 | 0.6150 | 0.4843 |
| DeepMeSH5 | 0.6578 | 0.7275 | 0.6219 | 0.6521 | 0.6909 | 0.5122 | 0.5177 | 0.7291 | 0.5993 | 0.5007 |
| Sequencer | 0.1072 | 0.1117 | 0.1064 | 0.1014 | 0.0019 | 0.0014 | 0.0013 | 0.1076 | 0.1069 | 0.0572 |
Hierarchical Measures
| System | LCA-F | HiP | HiR | HiF | LCA-P | LCA-R |
|---|---|---|---|---|---|---|
| MTI First Line Index | 0.4956 | 0.7916 | 0.6912 | 0.7167 | 0.5517 | 0.4764 |
| Default MTI | 0.5114 | 0.7593 | 0.7432 | 0.7318 | 0.5329 | 0.5205 |
| auth1 | 0.5051 | 0.7397 | 0.7487 | 0.7270 | 0.5170 | 0.5199 |
| auth2 | 0.5097 | 0.7463 | 0.7516 | 0.7319 | 0.5229 | 0.5235 |
| auth3 | 0.5054 | 0.7730 | 0.7209 | 0.7279 | 0.5406 | 0.5001 |
| auth4 | 0.5018 | 0.7518 | 0.7309 | 0.7201 | 0.5256 | 0.5101 |
| auth5 | 0.5095 | 0.7492 | 0.7508 | 0.7328 | 0.5225 | 0.5236 |
| Search system 1 | 0.3017 | 0.5039 | 0.5365 | 0.4984 | 0.2979 | 0.3369 |
| Search system 2 | 0.2978 | 0.4877 | 0.5420 | 0.4920 | 0.2877 | 0.3413 |
| Search system 3 | 0.2627 | 0.5646 | 0.3739 | 0.4209 | 0.3467 | 0.2351 |
| Search system 4 | 0.2871 | 0.4311 | 0.6005 | 0.4801 | 0.2510 | 0.3800 |
| Search system 5 | 0.2914 | 0.4504 | 0.5814 | 0.4867 | 0.2634 | 0.3651 |
| MZ1 | 0.4359 | 0.7458 | 0.6161 | 0.6499 | 0.5029 | 0.4127 |
| DeepMeSH1 | 0.5293 | 0.8195 | 0.7246 | 0.7503 | 0.5827 | 0.5104 |
| DeepMeSH2 | 0.5323 | 0.8084 | 0.7381 | 0.7536 | 0.5755 | 0.5203 |
| DeepMeSH3 | 0.5175 | 0.8123 | 0.7136 | 0.7407 | 0.5719 | 0.4981 |
| DeepMeSH4 | 0.5176 | 0.7950 | 0.7248 | 0.7400 | 0.5595 | 0.5068 |
| DeepMeSH5 | 0.5241 | 0.8290 | 0.7101 | 0.7461 | 0.5875 | 0.4977 |
| Sequencer | 0.1692 | 0.2425 | 0.2216 | 0.2152 | 0.1868 | 0.1730 |
+ Test batch 2, week 1
Annotated articles:7080/7431
Flat Measures
| System | MiF | EBP | EBR | EBF | MaP | MaR | MaF | MiP | MiR | Acc. |
|---|---|---|---|---|---|---|---|---|---|---|
| MTI First Line Index | 0.6180 | 0.6787 | 0.5917 | 0.6109 | 0.6511 | 0.5405 | 0.5241 | 0.6693 | 0.5741 | 0.4595 |
| Default MTI | 0.6274 | 0.6399 | 0.6463 | 0.6218 | 0.6104 | 0.5808 | 0.5446 | 0.6309 | 0.6239 | 0.4691 |
| auth1 | 0.6217 | 0.6082 | 0.6502 | 0.6118 | 0.6214 | 0.5169 | 0.5029 | 0.6118 | 0.6320 | 0.4554 |
| auth2 | 0.6297 | 0.6157 | 0.6573 | 0.6190 | 0.6310 | 0.5041 | 0.4905 | 0.6196 | 0.6400 | 0.4631 |
| auth3 | 0.6306 | 0.6464 | 0.6269 | 0.6188 | 0.6512 | 0.4842 | 0.4796 | 0.6507 | 0.6116 | 0.4639 |
| auth4 | 0.6296 | 0.6213 | 0.6520 | 0.6192 | 0.6185 | 0.5195 | 0.5046 | 0.6250 | 0.6343 | 0.4633 |
| auth5 | 0.6173 | 0.6140 | 0.6383 | 0.6050 | 0.6586 | 0.4880 | 0.4862 | 0.6085 | 0.6264 | 0.4486 |
| iria-1 | 0.4527 | 0.4050 | 0.5221 | 0.4430 | 0.3765 | 0.3710 | 0.3372 | 0.4094 | 0.5063 | 0.2975 |
| iria-2 | 0.4099 | 0.3710 | 0.4691 | 0.4003 | 0.2849 | 0.3356 | 0.2941 | 0.3719 | 0.4565 | 0.2629 |
| iria-3 | 0.4685 | 0.4179 | 0.5419 | 0.4588 | 0.4294 | 0.3761 | 0.3474 | 0.4233 | 0.5245 | 0.3105 |
| Search system 1 | 0.2766 | 0.2672 | 0.3114 | 0.2733 | 0.4398 | 0.4182 | 0.3540 | 0.2562 | 0.3006 | 0.1655 |
| Search system 2 | 0.2631 | 0.2434 | 0.3152 | 0.2605 | 0.4228 | 0.4213 | 0.3493 | 0.2316 | 0.3045 | 0.1561 |
| Search system 3 | 0.2092 | 0.2877 | 0.1798 | 0.2044 | 0.4043 | 0.2470 | 0.2483 | 0.2837 | 0.1657 | 0.1212 |
| Search system 4 | 0.2484 | 0.2090 | 0.3638 | 0.2506 | 0.3105 | 0.4824 | 0.3695 | 0.1915 | 0.3534 | 0.1484 |
| Search system 5 | 0.2602 | 0.2288 | 0.3396 | 0.2596 | 0.3289 | 0.4555 | 0.3657 | 0.2151 | 0.3292 | 0.1549 |
| MZ1 | 0.5393 | 0.5654 | 0.5386 | 0.5284 | 0.5925 | 0.3102 | 0.3068 | 0.5618 | 0.5185 | 0.3738 |
| DeepMeSH1 | 0.6602 | 0.7158 | 0.6365 | 0.6541 | 0.6926 | 0.5316 | 0.5338 | 0.7102 | 0.6169 | 0.5031 |
| DeepMeSH2 | 0.6587 | 0.7139 | 0.6345 | 0.6525 | 0.6896 | 0.5274 | 0.5295 | 0.7091 | 0.6150 | 0.5012 |
| DeepMeSH3 | 0.6474 | 0.6991 | 0.6246 | 0.6401 | 0.6717 | 0.5019 | 0.5040 | 0.6950 | 0.6060 | 0.4868 |
| DeepMeSH4 | 0.6394 | 0.6897 | 0.6161 | 0.6312 | 0.6624 | 0.4837 | 0.4873 | 0.6864 | 0.5985 | 0.4770 |
| DeepMeSH5 | 0.6596 | 0.6974 | 0.6485 | 0.6535 | 0.6731 | 0.5437 | 0.5375 | 0.6962 | 0.6266 | 0.5019 |
| Sequencer | 0.1036 | 0.1005 | 0.1058 | 0.0970 | 0.0013 | 0.0011 | 0.0010 | 0.0998 | 0.1077 | 0.0548 |
| MZ2 | 0.5481 | 0.6032 | 0.5227 | 0.5370 | 0.6022 | 0.3038 | 0.3022 | 0.6001 | 0.5044 | 0.3819 |
| MZ3 | 0.4056 | 0.3963 | 0.4388 | 0.4013 | 0.5130 | 0.2453 | 0.2404 | 0.3945 | 0.4173 | 0.2595 |
Hierarchical Measures
| System | LCA-F | HiP | HiR | HiF | LCA-P | LCA-R |
|---|---|---|---|---|---|---|
| MTI First Line Index | 0.4988 | 0.7929 | 0.6977 | 0.7212 | 0.5525 | 0.4821 |
| Default MTI | 0.5109 | 0.7584 | 0.7482 | 0.7332 | 0.5305 | 0.5223 |
| auth1 | 0.5038 | 0.7371 | 0.7541 | 0.7283 | 0.5128 | 0.5217 |
| auth2 | 0.5080 | 0.7426 | 0.7561 | 0.7320 | 0.5182 | 0.5247 |
| auth3 | 0.5050 | 0.7691 | 0.7264 | 0.7291 | 0.5364 | 0.5026 |
| auth4 | 0.5065 | 0.7461 | 0.7551 | 0.7331 | 0.5162 | 0.5234 |
| auth5 | 0.4993 | 0.7495 | 0.7349 | 0.7211 | 0.5202 | 0.5102 |
| iria-1 | 0.4010 | 0.5702 | 0.6721 | 0.6006 | 0.3831 | 0.4457 |
| iria-2 | 0.3753 | 0.5387 | 0.6376 | 0.5659 | 0.3580 | 0.4201 |
| iria-3 | 0.4092 | 0.5820 | 0.6830 | 0.6123 | 0.3920 | 0.4530 |
| Search system 1 | 0.3013 | 0.5071 | 0.5364 | 0.5007 | 0.2976 | 0.3350 |
| Search system 2 | 0.2977 | 0.4921 | 0.5417 | 0.4949 | 0.2879 | 0.3395 |
| Search system 3 | 0.2607 | 0.5682 | 0.3718 | 0.4206 | 0.3468 | 0.2322 |
| Search system 4 | 0.2874 | 0.4346 | 0.6048 | 0.4849 | 0.2504 | 0.3797 |
| Search system 5 | 0.2914 | 0.4530 | 0.5853 | 0.4907 | 0.2622 | 0.3650 |
| MZ1 | 0.4305 | 0.7143 | 0.6424 | 0.6502 | 0.4737 | 0.4277 |
| DeepMeSH1 | 0.5297 | 0.8173 | 0.7284 | 0.7510 | 0.5805 | 0.5128 |
| DeepMeSH2 | 0.5282 | 0.8160 | 0.7269 | 0.7496 | 0.5785 | 0.5114 |
| DeepMeSH3 | 0.5181 | 0.8076 | 0.7197 | 0.7416 | 0.5681 | 0.5024 |
| DeepMeSH4 | 0.5108 | 0.8019 | 0.7128 | 0.7351 | 0.5604 | 0.4955 |
| DeepMeSH5 | 0.5306 | 0.8045 | 0.7413 | 0.7531 | 0.5699 | 0.5221 |
| Sequencer | 0.1717 | 0.2349 | 0.2364 | 0.2212 | 0.1806 | 0.1811 |
| MZ2 | 0.4339 | 0.7426 | 0.6250 | 0.6530 | 0.4985 | 0.4142 |
| MZ3 | 0.3660 | 0.5665 | 0.6587 | 0.5898 | 0.3510 | 0.4094 |
+ Test batch 2, week 2
Annotated articles:6357/6746
Flat Measures
| System | MiF | EBP | EBR | EBF | MaP | MaR | MaF | MiP | MiR | Acc. |
|---|---|---|---|---|---|---|---|---|---|---|
| MTI First Line Index | 0.6226 | 0.6793 | 0.6002 | 0.6154 | 0.6400 | 0.5444 | 0.5264 | 0.6705 | 0.5811 | 0.4625 |
| Default MTI | 0.6308 | 0.6379 | 0.6532 | 0.6242 | 0.5980 | 0.5868 | 0.5471 | 0.6294 | 0.6323 | 0.4698 |
| auth1 | 0.6243 | 0.6088 | 0.6541 | 0.6131 | 0.6126 | 0.5138 | 0.4988 | 0.6121 | 0.6370 | 0.4567 |
| auth2 | 0.6316 | 0.6160 | 0.6615 | 0.6202 | 0.6237 | 0.5014 | 0.4862 | 0.6192 | 0.6444 | 0.4644 |
| auth3 | 0.6320 | 0.6435 | 0.6332 | 0.6199 | 0.6425 | 0.4823 | 0.4760 | 0.6475 | 0.6173 | 0.4647 |
| auth4 | 0.6318 | 0.6207 | 0.6569 | 0.6203 | 0.6114 | 0.5169 | 0.5007 | 0.6241 | 0.6398 | 0.4644 |
| auth5 | 0.6208 | 0.6126 | 0.6465 | 0.6075 | 0.6439 | 0.4890 | 0.4823 | 0.6075 | 0.6346 | 0.4512 |
| iria-1 | 0.4839 | 0.4313 | 0.5591 | 0.4732 | 0.3829 | 0.4076 | 0.3647 | 0.4350 | 0.5451 | 0.3232 |
| Search system 1 | 0.2802 | 0.2703 | 0.3166 | 0.2759 | 0.4337 | 0.4176 | 0.3544 | 0.2592 | 0.3049 | 0.1673 |
| Search system 2 | 0.2667 | 0.2454 | 0.3213 | 0.2627 | 0.4167 | 0.4223 | 0.3504 | 0.2341 | 0.3097 | 0.1575 |
| Search system 3 | 0.2169 | 0.2998 | 0.1869 | 0.2130 | 0.4082 | 0.2530 | 0.2555 | 0.2938 | 0.1719 | 0.1267 |
| Search system 4 | 0.2516 | 0.2117 | 0.3713 | 0.2527 | 0.3014 | 0.4854 | 0.3716 | 0.1934 | 0.3600 | 0.1496 |
| Search system 5 | 0.2635 | 0.2321 | 0.3455 | 0.2621 | 0.3207 | 0.4555 | 0.3673 | 0.2175 | 0.3342 | 0.1564 |
| MZ1 | 0.4678 | 0.5572 | 0.4269 | 0.4596 | 0.6535 | 0.1271 | 0.1500 | 0.5489 | 0.4076 | 0.3131 |
| DeepMeSH1 | 0.6651 | 0.7139 | 0.6446 | 0.6574 | 0.6820 | 0.5360 | 0.5356 | 0.7107 | 0.6250 | 0.5062 |
| DeepMeSH2 | 0.6634 | 0.7130 | 0.6426 | 0.6557 | 0.6806 | 0.5322 | 0.5320 | 0.7093 | 0.6230 | 0.5041 |
| DeepMeSH3 | 0.6519 | 0.6985 | 0.6317 | 0.6430 | 0.6657 | 0.5074 | 0.5064 | 0.6958 | 0.6132 | 0.4897 |
| DeepMeSH4 | 0.6438 | 0.6897 | 0.6240 | 0.6345 | 0.6595 | 0.4906 | 0.4917 | 0.6868 | 0.6058 | 0.4804 |
| DeepMeSH5 | 0.6642 | 0.6981 | 0.6565 | 0.6568 | 0.6659 | 0.5484 | 0.5393 | 0.6962 | 0.6350 | 0.5049 |
| Sequencer | 0.5410 | 0.5378 | 0.5704 | 0.5330 | 0.4558 | 0.3530 | 0.3326 | 0.5210 | 0.5626 | 0.3808 |
| MZ2 | 0.4623 | 0.5019 | 0.4472 | 0.4530 | 0.6507 | 0.1298 | 0.1522 | 0.5000 | 0.4299 | 0.3072 |
| MZ3 | 0.4054 | 0.3963 | 0.4364 | 0.4010 | 0.5080 | 0.2446 | 0.2401 | 0.3951 | 0.4163 | 0.2593 |
| MZ4 | 0.4532 | 0.4590 | 0.4712 | 0.4445 | 0.5194 | 0.2154 | 0.2156 | 0.4538 | 0.4526 | 0.2987 |
Hierarchical Measures
| System | LCA-F | HiP | HiR | HiF | LCA-P | LCA-R |
|---|---|---|---|---|---|---|
| MTI First Line Index | 0.4996 | 0.7908 | 0.7038 | 0.7228 | 0.5515 | 0.4858 |
| Default MTI | 0.5104 | 0.7569 | 0.7526 | 0.7342 | 0.5280 | 0.5250 |
| auth1 | 0.5038 | 0.7356 | 0.7535 | 0.7259 | 0.5127 | 0.5237 |
| auth2 | 0.5072 | 0.7416 | 0.7563 | 0.7303 | 0.5175 | 0.5260 |
| auth3 | 0.5034 | 0.7648 | 0.7279 | 0.7265 | 0.5335 | 0.5042 |
| auth4 | 0.5065 | 0.7442 | 0.7562 | 0.7313 | 0.5159 | 0.5259 |
| auth5 | 0.5009 | 0.7466 | 0.7385 | 0.7206 | 0.5192 | 0.5161 |
| iria-1 | 0.4196 | 0.5885 | 0.7007 | 0.6228 | 0.3988 | 0.4696 |
| Search system 1 | 0.3014 | 0.5106 | 0.5399 | 0.5024 | 0.2981 | 0.3378 |
| Search system 2 | 0.2975 | 0.4948 | 0.5451 | 0.4961 | 0.2881 | 0.3422 |
| Search system 3 | 0.2620 | 0.5727 | 0.3762 | 0.4260 | 0.3475 | 0.2338 |
| Search system 4 | 0.2856 | 0.4368 | 0.6055 | 0.4843 | 0.2493 | 0.3824 |
| Search system 5 | 0.2895 | 0.4559 | 0.5862 | 0.4907 | 0.2612 | 0.3668 |
| MZ1 | 0.3609 | 0.7323 | 0.4884 | 0.5533 | 0.4846 | 0.3154 |
| DeepMeSH1 | 0.5295 | 0.8150 | 0.7313 | 0.7506 | 0.5793 | 0.5151 |
| DeepMeSH2 | 0.5280 | 0.8145 | 0.7290 | 0.7491 | 0.5786 | 0.5130 |
| DeepMeSH3 | 0.5185 | 0.8047 | 0.7207 | 0.7400 | 0.5680 | 0.5039 |
| DeepMeSH4 | 0.5123 | 0.7993 | 0.7155 | 0.7343 | 0.5617 | 0.4983 |
| DeepMeSH5 | 0.5299 | 0.8031 | 0.7425 | 0.7517 | 0.5694 | 0.5233 |
| Sequencer | 0.4650 | 0.7001 | 0.7037 | 0.6800 | 0.4801 | 0.4808 |
| MZ2 | 0.3678 | 0.6880 | 0.5169 | 0.5630 | 0.4483 | 0.3389 |
| MZ3 | 0.3674 | 0.5667 | 0.6561 | 0.5899 | 0.3532 | 0.4094 |
| MZ4 | 0.3677 | 0.6462 | 0.5537 | 0.5689 | 0.4118 | 0.3627 |
+ Test batch 2, week 3
Annotated articles:5479/5944
Flat Measures
| System | MiF | EBP | EBR | EBF | MaP | MaR | MaF | MiP | MiR | Acc. |
|---|---|---|---|---|---|---|---|---|---|---|
| MTI First Line Index | 0.6212 | 0.6862 | 0.5870 | 0.6139 | 0.6443 | 0.5372 | 0.5224 | 0.6786 | 0.5727 | 0.4613 |
| Default MTI | 0.6312 | 0.6472 | 0.6391 | 0.6253 | 0.6083 | 0.5768 | 0.5437 | 0.6408 | 0.6218 | 0.4717 |
| auth1 | 0.6303 | 0.6263 | 0.6440 | 0.6210 | 0.6288 | 0.5128 | 0.5027 | 0.6310 | 0.6296 | 0.4646 |
| auth2 | 0.6375 | 0.6335 | 0.6512 | 0.6281 | 0.6371 | 0.5014 | 0.4905 | 0.6382 | 0.6368 | 0.4722 |
| auth3 | 0.6372 | 0.6631 | 0.6209 | 0.6264 | 0.6576 | 0.4815 | 0.4785 | 0.6683 | 0.6088 | 0.4715 |
| auth4 | 0.6375 | 0.6389 | 0.6458 | 0.6279 | 0.6254 | 0.5150 | 0.5042 | 0.6435 | 0.6316 | 0.4721 |
| auth5 | 0.6412 | 0.6336 | 0.6590 | 0.6320 | 0.6247 | 0.5345 | 0.5194 | 0.6386 | 0.6438 | 0.4763 |
| iria-1 | 0.4844 | 0.4379 | 0.5498 | 0.4758 | 0.3888 | 0.3999 | 0.3649 | 0.4421 | 0.5356 | 0.3249 |
| MZ1 | 0.4573 | 0.5559 | 0.4127 | 0.4502 | 0.6603 | 0.1371 | 0.1594 | 0.5442 | 0.3944 | 0.3042 |
| DeepMeSH1 | 0.6649 | 0.7278 | 0.6299 | 0.6583 | 0.6994 | 0.5282 | 0.5319 | 0.7249 | 0.6140 | 0.5071 |
| DeepMeSH2 | 0.6632 | 0.7273 | 0.6275 | 0.6564 | 0.6944 | 0.5223 | 0.5269 | 0.7241 | 0.6117 | 0.5050 |
| DeepMeSH3 | 0.6524 | 0.7136 | 0.6183 | 0.6452 | 0.6770 | 0.4996 | 0.5034 | 0.7109 | 0.6028 | 0.4917 |
| DeepMeSH4 | 0.6457 | 0.7063 | 0.6105 | 0.6376 | 0.6713 | 0.4827 | 0.4878 | 0.7040 | 0.5963 | 0.4835 |
| DeepMeSH5 | 0.6645 | 0.7128 | 0.6407 | 0.6582 | 0.6796 | 0.5404 | 0.5372 | 0.7124 | 0.6226 | 0.5065 |
| Sequencer | 0.5387 | 0.5473 | 0.5539 | 0.5323 | 0.4668 | 0.3482 | 0.3323 | 0.5293 | 0.5484 | 0.3793 |
| MZ2 | 0.4514 | 0.4999 | 0.4311 | 0.4439 | 0.6597 | 0.1397 | 0.1616 | 0.4959 | 0.4142 | 0.2985 |
| MZ3 | 0.4023 | 0.4016 | 0.4219 | 0.3984 | 0.5160 | 0.2481 | 0.2427 | 0.4005 | 0.4041 | 0.2565 |
| MZ4 | 0.4418 | 0.4554 | 0.4543 | 0.4350 | 0.5336 | 0.2225 | 0.2251 | 0.4478 | 0.4360 | 0.2899 |
| SanMatrix1 | 0.0968 | 0.6713 | 0.0565 | 0.1030 | 0.6713 | 0.0001 | 0.0001 | 0.6713 | 0.0521 | 0.0565 |
| Sequencer _T | 0.5645 | 0.5907 | 0.5652 | 0.5594 | 0.5150 | 0.3633 | 0.3535 | 0.5713 | 0.5579 | 0.4056 |
| SanMatrix2 | 0.0076 | 0.0063 | 0.0088 | 0.0071 | 0.0018 | 0.0013 | 0.0001 | 0.0063 | 0.0097 | 0.0037 |
Hierarchical Measures
| System | LCA-F | HiP | HiR | HiF | LCA-P | LCA-R |
|---|---|---|---|---|---|---|
| MTI First Line Index | 0.4975 | 0.8004 | 0.6893 | 0.7207 | 0.5572 | 0.4745 |
| Default MTI | 0.5110 | 0.7661 | 0.7371 | 0.7323 | 0.5368 | 0.5145 |
| auth1 | 0.5057 | 0.7492 | 0.7409 | 0.7291 | 0.5236 | 0.5124 |
| auth2 | 0.5107 | 0.7546 | 0.7425 | 0.7326 | 0.5295 | 0.5163 |
| auth3 | 0.5052 | 0.7807 | 0.7124 | 0.7284 | 0.5461 | 0.4923 |
| auth4 | 0.5095 | 0.7575 | 0.7420 | 0.7334 | 0.5292 | 0.5145 |
| auth5 | 0.5144 | 0.7537 | 0.7521 | 0.7373 | 0.5307 | 0.5224 |
| iria-1 | 0.4183 | 0.5937 | 0.6864 | 0.6207 | 0.4026 | 0.4589 |
| MZ1 | 0.3546 | 0.7284 | 0.4819 | 0.5464 | 0.4806 | 0.3077 |
| DeepMeSH1 | 0.5281 | 0.8257 | 0.7143 | 0.7474 | 0.5887 | 0.5020 |
| DeepMeSH2 | 0.5261 | 0.8258 | 0.7117 | 0.7458 | 0.5874 | 0.5001 |
| DeepMeSH3 | 0.5176 | 0.8163 | 0.7051 | 0.7379 | 0.5772 | 0.4923 |
| DeepMeSH4 | 0.5115 | 0.8116 | 0.6984 | 0.7321 | 0.5723 | 0.4862 |
| DeepMeSH5 | 0.5291 | 0.8152 | 0.7254 | 0.7498 | 0.5799 | 0.5103 |
| Sequencer | 0.4627 | 0.7098 | 0.6876 | 0.6783 | 0.4867 | 0.4676 |
| MZ2 | 0.3628 | 0.6882 | 0.5088 | 0.5572 | 0.4478 | 0.3305 |
| MZ3 | 0.3643 | 0.5715 | 0.6416 | 0.5860 | 0.3555 | 0.3987 |
| MZ4 | 0.3621 | 0.6448 | 0.5446 | 0.5622 | 0.4099 | 0.3534 |
| SanMatrix1 | 0.0730 | 0.6896 | 0.0634 | 0.1148 | 0.2789 | 0.0428 |
| Sequencer _T | 0.4798 | 0.7459 | 0.6921 | 0.6978 | 0.5165 | 0.4740 |
| SanMatrix2 | 0.1232 | 0.1078 | 0.2119 | 0.1381 | 0.0942 | 0.1901 |
+ Test batch 2, week 4
Annotated articles:6526/6986
Flat Measures
| System | MiF | EBP | EBR | EBF | MaP | MaR | MaF | MiP | MiR | Acc. |
|---|---|---|---|---|---|---|---|---|---|---|
| MTI First Line Index | 0.6158 | 0.6830 | 0.5923 | 0.6129 | 0.6361 | 0.5384 | 0.5209 | 0.6706 | 0.5693 | 0.4614 |
| Default MTI | 0.6291 | 0.6441 | 0.6478 | 0.6255 | 0.6003 | 0.5757 | 0.5400 | 0.6360 | 0.6225 | 0.4726 |
| auth1 | 0.6192 | 0.6136 | 0.6414 | 0.6098 | 0.6105 | 0.5136 | 0.4989 | 0.6178 | 0.6205 | 0.4533 |
| auth2 | 0.6273 | 0.6216 | 0.6490 | 0.6174 | 0.6232 | 0.5010 | 0.4863 | 0.6259 | 0.6287 | 0.4615 |
| auth3 | 0.6258 | 0.6489 | 0.6187 | 0.6154 | 0.6436 | 0.4811 | 0.4752 | 0.6536 | 0.6003 | 0.4600 |
| auth4 | 0.6277 | 0.6271 | 0.6448 | 0.6180 | 0.6098 | 0.5166 | 0.5013 | 0.6312 | 0.6242 | 0.4622 |
| auth5 | 0.6304 | 0.6211 | 0.6561 | 0.6208 | 0.6093 | 0.5326 | 0.5129 | 0.6259 | 0.6350 | 0.4647 |
| iria-1 | 0.4959 | 0.4470 | 0.5675 | 0.4857 | 0.4243 | 0.4105 | 0.3751 | 0.4519 | 0.5494 | 0.3337 |
| Search system 1 | 0.2803 | 0.2747 | 0.3169 | 0.2787 | 0.4238 | 0.4184 | 0.3529 | 0.2614 | 0.3023 | 0.1692 |
| Search system 2 | 0.2665 | 0.2496 | 0.3213 | 0.2654 | 0.4075 | 0.4227 | 0.3488 | 0.2356 | 0.3068 | 0.1594 |
| Search system 3 | 0.2175 | 0.3033 | 0.1885 | 0.2149 | 0.4071 | 0.2541 | 0.2559 | 0.2966 | 0.1717 | 0.1281 |
| Search system 4 | 0.2529 | 0.2175 | 0.3701 | 0.2568 | 0.2992 | 0.4852 | 0.3700 | 0.1960 | 0.3564 | 0.1525 |
| Search system 5 | 0.2643 | 0.2375 | 0.3443 | 0.2653 | 0.3181 | 0.4568 | 0.3654 | 0.2201 | 0.3308 | 0.1587 |
| DeepMeSH1 | 0.6613 | 0.7230 | 0.6342 | 0.6571 | 0.6854 | 0.5335 | 0.5347 | 0.7187 | 0.6123 | 0.5061 |
| DeepMeSH2 | 0.6596 | 0.7210 | 0.6319 | 0.6549 | 0.6808 | 0.5277 | 0.5292 | 0.7171 | 0.6106 | 0.5038 |
| DeepMeSH3 | 0.6484 | 0.7080 | 0.6211 | 0.6426 | 0.6704 | 0.5032 | 0.5051 | 0.7049 | 0.6003 | 0.4895 |
| DeepMeSH4 | 0.6417 | 0.6988 | 0.6144 | 0.6351 | 0.6595 | 0.4876 | 0.4900 | 0.6970 | 0.5945 | 0.4815 |
| DeepMeSH5 | 0.6599 | 0.7057 | 0.6455 | 0.6557 | 0.6672 | 0.5449 | 0.5381 | 0.7042 | 0.6208 | 0.5043 |
| SanMatrix1 | 0.1228 | 0.0769 | 0.2859 | 0.1186 | 0.0173 | 0.0048 | 0.0006 | 0.0769 | 0.3039 | 0.0654 |
Hierarchical Measures
| System | LCA-F | HiP | HiR | HiF | LCA-P | LCA-R |
|---|---|---|---|---|---|---|
| MTI First Line Index | 0.5020 | 0.7973 | 0.6937 | 0.7214 | 0.5563 | 0.4841 |
| Default MTI | 0.5142 | 0.7647 | 0.7469 | 0.7365 | 0.5349 | 0.5232 |
| auth1 | 0.5016 | 0.7440 | 0.7437 | 0.7264 | 0.5168 | 0.5136 |
| auth2 | 0.5055 | 0.7502 | 0.7477 | 0.7317 | 0.5219 | 0.5165 |
| auth3 | 0.5012 | 0.7742 | 0.7170 | 0.7265 | 0.5380 | 0.4941 |
| auth4 | 0.5060 | 0.7537 | 0.7470 | 0.7329 | 0.5220 | 0.5174 |
| auth5 | 0.5103 | 0.7497 | 0.7566 | 0.7361 | 0.5240 | 0.5237 |
| iria-1 | 0.4255 | 0.6094 | 0.7031 | 0.6364 | 0.4103 | 0.4679 |
| Search system 1 | 0.3040 | 0.5154 | 0.5416 | 0.5054 | 0.3014 | 0.3388 |
| Search system 2 | 0.3000 | 0.4997 | 0.5470 | 0.4994 | 0.2912 | 0.3432 |
| Search system 3 | 0.2652 | 0.5794 | 0.3785 | 0.4294 | 0.3506 | 0.2374 |
| Search system 4 | 0.2900 | 0.4445 | 0.6053 | 0.4889 | 0.2553 | 0.3829 |
| Search system 5 | 0.2937 | 0.4639 | 0.5865 | 0.4955 | 0.2669 | 0.3677 |
| DeepMeSH1 | 0.5314 | 0.8265 | 0.7248 | 0.7544 | 0.5867 | 0.5095 |
| DeepMeSH2 | 0.5296 | 0.8257 | 0.7231 | 0.7528 | 0.5843 | 0.5084 |
| DeepMeSH3 | 0.5190 | 0.8173 | 0.7155 | 0.7445 | 0.5735 | 0.4979 |
| DeepMeSH4 | 0.5146 | 0.8122 | 0.7104 | 0.7397 | 0.5689 | 0.4935 |
| DeepMeSH5 | 0.5318 | 0.8134 | 0.7359 | 0.7550 | 0.5758 | 0.5185 |
| SanMatrix1 | 0.1830 | 0.1897 | 0.4538 | 0.2600 | 0.1303 | 0.3332 |
+ Test batch 2, week 5
Annotated articles:5492/6055
Flat Measures
| System | MiF | EBP | EBR | EBF | MaP | MaR | MaF | MiP | MiR | Acc. |
|---|---|---|---|---|---|---|---|---|---|---|
| MTI First Line Index | 0.6195 | 0.6765 | 0.5911 | 0.6101 | 0.6314 | 0.5487 | 0.5270 | 0.6697 | 0.5763 | 0.4573 |
| Default MTI | 0.6281 | 0.6344 | 0.6475 | 0.6206 | 0.5929 | 0.5938 | 0.5493 | 0.6282 | 0.6281 | 0.4678 |
| auth1 | 0.6237 | 0.6119 | 0.6459 | 0.6118 | 0.6073 | 0.5200 | 0.5020 | 0.6178 | 0.6297 | 0.4557 |
| auth2 | 0.6314 | 0.6194 | 0.6536 | 0.6193 | 0.6173 | 0.5103 | 0.4914 | 0.6255 | 0.6375 | 0.4638 |
| auth3 | 0.6309 | 0.6471 | 0.6235 | 0.6180 | 0.6381 | 0.4914 | 0.4814 | 0.6539 | 0.6095 | 0.4630 |
| auth4 | 0.6319 | 0.6255 | 0.6486 | 0.6199 | 0.6079 | 0.5231 | 0.5043 | 0.6314 | 0.6323 | 0.4644 |
| auth5 | 0.6341 | 0.6183 | 0.6596 | 0.6220 | 0.6060 | 0.5413 | 0.5168 | 0.6254 | 0.6430 | 0.4667 |
| iria-1 | 0.5010 | 0.4653 | 0.5496 | 0.4898 | 0.4371 | 0.3985 | 0.3689 | 0.4719 | 0.5341 | 0.3375 |
| DeepMeSH1 | 0.6620 | 0.7148 | 0.6342 | 0.6533 | 0.6780 | 0.5404 | 0.5366 | 0.7134 | 0.6174 | 0.5022 |
| DeepMeSH2 | 0.6609 | 0.7139 | 0.6325 | 0.6517 | 0.6791 | 0.5375 | 0.5335 | 0.7132 | 0.6157 | 0.5005 |
| DeepMeSH3 | 0.6491 | 0.6997 | 0.6212 | 0.6391 | 0.6602 | 0.5077 | 0.5036 | 0.6994 | 0.6056 | 0.4860 |
| DeepMeSH4 | 0.6429 | 0.6946 | 0.6133 | 0.6321 | 0.6529 | 0.4901 | 0.4887 | 0.6945 | 0.5985 | 0.4781 |
| DeepMeSH5 | 0.6622 | 0.7008 | 0.6466 | 0.6537 | 0.6611 | 0.5536 | 0.5421 | 0.7019 | 0.6268 | 0.5021 |
Hierarchical Measures
| System | LCA-F | HiP | HiR | HiF | LCA-P | LCA-R |
|---|---|---|---|---|---|---|
| MTI First Line Index | 0.4947 | 0.7896 | 0.6936 | 0.7171 | 0.5464 | 0.4789 |
| Default MTI | 0.5088 | 0.7530 | 0.7467 | 0.7294 | 0.5258 | 0.5235 |
| auth1 | 0.5013 | 0.7363 | 0.7504 | 0.7254 | 0.5124 | 0.5169 |
| auth2 | 0.5060 | 0.7430 | 0.7530 | 0.7301 | 0.5182 | 0.5208 |
| auth3 | 0.5009 | 0.7667 | 0.7231 | 0.7261 | 0.5331 | 0.4977 |
| auth4 | 0.5055 | 0.7467 | 0.7525 | 0.7317 | 0.5177 | 0.5202 |
| auth5 | 0.5112 | 0.7426 | 0.7616 | 0.7346 | 0.5200 | 0.5287 |
| iria-1 | 0.4251 | 0.6207 | 0.6848 | 0.6338 | 0.4212 | 0.4537 |
| DeepMeSH1 | 0.5268 | 0.8160 | 0.7232 | 0.7472 | 0.5767 | 0.5102 |
| DeepMeSH2 | 0.5252 | 0.8143 | 0.7216 | 0.7454 | 0.5751 | 0.5088 |
| DeepMeSH3 | 0.5156 | 0.8060 | 0.7162 | 0.7385 | 0.5647 | 0.4996 |
| DeepMeSH4 | 0.5107 | 0.8030 | 0.7097 | 0.7333 | 0.5618 | 0.4934 |
| DeepMeSH5 | 0.5279 | 0.8052 | 0.7359 | 0.7494 | 0.5688 | 0.5192 |
+ Test batch 3, week 1
Annotated articles:7356/9233
Flat Measures
| System | MiF | EBP | EBR | EBF | MaP | MaR | MaF | MiP | MiR | Acc. |
|---|---|---|---|---|---|---|---|---|---|---|
| MTI First Line Index | 0.5483 | 0.6087 | 0.5233 | 0.5407 | 0.5721 | 0.5054 | 0.4765 | 0.5959 | 0.5077 | 0.3889 |
| Default MTI | 0.6307 | 0.6482 | 0.6332 | 0.6215 | 0.6056 | 0.5803 | 0.5444 | 0.6428 | 0.6191 | 0.4685 |
| auth1 | 0.6236 | 0.6111 | 0.6430 | 0.6115 | 0.6186 | 0.5078 | 0.4968 | 0.6162 | 0.6312 | 0.4557 |
| auth2 | 0.6311 | 0.6185 | 0.6506 | 0.6188 | 0.6300 | 0.4945 | 0.4837 | 0.6236 | 0.6388 | 0.4636 |
| auth3 | 0.6316 | 0.6492 | 0.6196 | 0.6179 | 0.6502 | 0.4747 | 0.4720 | 0.6550 | 0.6098 | 0.4635 |
| auth4 | 0.6311 | 0.6238 | 0.6447 | 0.6184 | 0.6164 | 0.5110 | 0.4996 | 0.6289 | 0.6333 | 0.4633 |
| auth5 | 0.6356 | 0.6197 | 0.6598 | 0.6243 | 0.6152 | 0.5303 | 0.5133 | 0.6249 | 0.6468 | 0.4691 |
| Search system 1 | 0.2752 | 0.2714 | 0.3037 | 0.2714 | 0.4411 | 0.4133 | 0.3539 | 0.2575 | 0.2955 | 0.1639 |
| Search system 2 | 0.2623 | 0.2473 | 0.3079 | 0.2590 | 0.4256 | 0.4178 | 0.3502 | 0.2332 | 0.2996 | 0.1548 |
| Search system 3 | 0.2096 | 0.2957 | 0.1764 | 0.2047 | 0.4158 | 0.2482 | 0.2531 | 0.2880 | 0.1647 | 0.1210 |
| Search system 4 | 0.2483 | 0.2134 | 0.3567 | 0.2502 | 0.3125 | 0.4835 | 0.3741 | 0.1923 | 0.3503 | 0.1480 |
| Search system 5 | 0.2600 | 0.2334 | 0.3324 | 0.2590 | 0.3297 | 0.4540 | 0.3680 | 0.2162 | 0.3259 | 0.1543 |
| DeepMeSH1 | 0.6634 | 0.7253 | 0.6260 | 0.6533 | 0.6831 | 0.5273 | 0.5293 | 0.7209 | 0.6144 | 0.5023 |
| DeepMeSH2 | 0.6614 | 0.7212 | 0.6245 | 0.6508 | 0.6815 | 0.5240 | 0.5256 | 0.7179 | 0.6131 | 0.4996 |
| DeepMeSH3 | 0.6512 | 0.7059 | 0.6173 | 0.6401 | 0.6642 | 0.4971 | 0.4992 | 0.7025 | 0.6069 | 0.4876 |
| DeepMeSH4 | 0.6437 | 0.6970 | 0.6102 | 0.6321 | 0.6554 | 0.4796 | 0.4821 | 0.6946 | 0.5998 | 0.4788 |
| DeepMeSH5 | 0.6621 | 0.7053 | 0.6384 | 0.6524 | 0.6632 | 0.5418 | 0.5347 | 0.7048 | 0.6243 | 0.5011 |
Hierarchical Measures
| System | LCA-F | HiP | HiR | HiF | LCA-P | LCA-R |
|---|---|---|---|---|---|---|
| MTI First Line Index | 0.4493 | 0.7411 | 0.6634 | 0.6773 | 0.4951 | 0.4400 |
| Default MTI | 0.5116 | 0.7650 | 0.7378 | 0.7317 | 0.5384 | 0.5160 |
| auth1 | 0.5039 | 0.7384 | 0.7473 | 0.7258 | 0.5158 | 0.5185 |
| auth2 | 0.5084 | 0.7447 | 0.7492 | 0.7301 | 0.5213 | 0.5222 |
| auth3 | 0.5040 | 0.7696 | 0.7187 | 0.7255 | 0.5393 | 0.4983 |
| auth4 | 0.5067 | 0.7481 | 0.7489 | 0.7313 | 0.5191 | 0.5208 |
| auth5 | 0.5133 | 0.7450 | 0.7599 | 0.7360 | 0.5230 | 0.5298 |
| Search system 1 | 0.2988 | 0.5094 | 0.5290 | 0.4966 | 0.2974 | 0.3324 |
| Search system 2 | 0.2949 | 0.4948 | 0.5345 | 0.4911 | 0.2876 | 0.3365 |
| Search system 3 | 0.2606 | 0.5730 | 0.3703 | 0.4217 | 0.3477 | 0.2315 |
| Search system 4 | 0.2849 | 0.4367 | 0.5957 | 0.4806 | 0.2508 | 0.3769 |
| Search system 5 | 0.2885 | 0.4554 | 0.5768 | 0.4867 | 0.2624 | 0.3613 |
| DeepMeSH1 | 0.5278 | 0.8248 | 0.7172 | 0.7478 | 0.5874 | 0.5050 |
| DeepMeSH2 | 0.5261 | 0.8223 | 0.7159 | 0.7460 | 0.5852 | 0.5035 |
| DeepMeSH3 | 0.5187 | 0.8128 | 0.7106 | 0.7390 | 0.5751 | 0.4980 |
| DeepMeSH4 | 0.5121 | 0.8065 | 0.7050 | 0.7328 | 0.5689 | 0.4913 |
| DeepMeSH5 | 0.5297 | 0.8104 | 0.7309 | 0.7501 | 0.5768 | 0.5156 |
+ Test batch 3, week 2
Annotated articles:5304/7816
Flat Measures
| System | MiF | EBP | EBR | EBF | MaP | MaR | MaF | MiP | MiR | Acc. |
|---|---|---|---|---|---|---|---|---|---|---|
| MTI First Line Index | 0.6053 | 0.6759 | 0.5667 | 0.5971 | 0.6406 | 0.5375 | 0.5221 | 0.6700 | 0.5520 | 0.4449 |
| Default MTI | 0.6181 | 0.6434 | 0.6171 | 0.6115 | 0.6066 | 0.5820 | 0.5487 | 0.6390 | 0.5985 | 0.4590 |
| iria-1 | 0.4864 | 0.4383 | 0.5533 | 0.4765 | 0.4295 | 0.4185 | 0.3830 | 0.4425 | 0.5401 | 0.3255 |
| iria-2 | 0.5225 | 0.4720 | 0.5972 | 0.5135 | 0.4713 | 0.4877 | 0.4426 | 0.4752 | 0.5803 | 0.3582 |
| Search system 1 | 0.2832 | 0.2808 | 0.3127 | 0.2810 | 0.4433 | 0.4089 | 0.3512 | 0.2677 | 0.3005 | 0.1705 |
| Search system 2 | 0.2699 | 0.2550 | 0.3180 | 0.2682 | 0.4257 | 0.4133 | 0.3473 | 0.2416 | 0.3057 | 0.1609 |
| Search system 3 | 0.2120 | 0.3066 | 0.1778 | 0.2083 | 0.4207 | 0.2422 | 0.2470 | 0.3004 | 0.1638 | 0.1235 |
| Search system 4 | 0.2554 | 0.2186 | 0.3716 | 0.2587 | 0.3090 | 0.4748 | 0.3703 | 0.1980 | 0.3597 | 0.1534 |
| Search system 5 | 0.2664 | 0.2395 | 0.3424 | 0.2669 | 0.3282 | 0.4437 | 0.3628 | 0.2229 | 0.3312 | 0.1595 |
| DeepMeSH1 | 0.6546 | 0.7147 | 0.6187 | 0.6465 | 0.6870 | 0.5373 | 0.5381 | 0.7121 | 0.6058 | 0.4948 |
| DeepMeSH2 | 0.6527 | 0.7124 | 0.6169 | 0.6444 | 0.6863 | 0.5345 | 0.5352 | 0.7101 | 0.6039 | 0.4925 |
| DeepMeSH3 | 0.6402 | 0.6973 | 0.6049 | 0.6308 | 0.6624 | 0.5039 | 0.5052 | 0.6952 | 0.5933 | 0.4769 |
| DeepMeSH4 | 0.6336 | 0.6887 | 0.5979 | 0.6228 | 0.6602 | 0.4892 | 0.4908 | 0.6878 | 0.5874 | 0.4687 |
| DeepMeSH5 | 0.6529 | 0.6988 | 0.6290 | 0.6458 | 0.6715 | 0.5476 | 0.5421 | 0.6989 | 0.6126 | 0.4937 |
| Optimize Micro AUC | 0.2474 | 0.2478 | 0.2371 | 0.2354 | 0.2674 | 0.0024 | 0.0014 | 0.2478 | 0.2471 | 0.1435 |
| Optimize Macro AUC | 0.0102 | 0.0103 | 0.0111 | 0.0103 | 0.1117 | 0.0209 | 0.0125 | 0.0103 | 0.0102 | 0.0054 |
Hierarchical Measures
| System | LCA-F | HiP | HiR | HiF | LCA-P | LCA-R |
|---|---|---|---|---|---|---|
| MTI First Line Index | 0.4884 | 0.7965 | 0.6794 | 0.7143 | 0.5523 | 0.4618 |
| Default MTI | 0.5038 | 0.7655 | 0.7266 | 0.7274 | 0.5345 | 0.5017 |
| iria-1 | 0.4222 | 0.5991 | 0.6932 | 0.6272 | 0.4074 | 0.4619 |
| iria-2 | 0.4456 | 0.6291 | 0.7297 | 0.6603 | 0.4296 | 0.4875 |
| Search system 1 | 0.3033 | 0.5197 | 0.5387 | 0.5085 | 0.3040 | 0.3325 |
| Search system 2 | 0.2998 | 0.5033 | 0.5450 | 0.5026 | 0.2934 | 0.3378 |
| Search system 3 | 0.2596 | 0.5821 | 0.3652 | 0.4209 | 0.3544 | 0.2270 |
| Search system 4 | 0.2910 | 0.4419 | 0.6096 | 0.4905 | 0.2554 | 0.3821 |
| Search system 5 | 0.2944 | 0.4625 | 0.5872 | 0.4967 | 0.2683 | 0.3641 |
| DeepMeSH1 | 0.5235 | 0.8198 | 0.7131 | 0.7459 | 0.5817 | 0.4979 |
| DeepMeSH2 | 0.5229 | 0.8190 | 0.7121 | 0.7449 | 0.5811 | 0.4974 |
| DeepMeSH3 | 0.5108 | 0.8090 | 0.7034 | 0.7352 | 0.5685 | 0.4861 |
| DeepMeSH4 | 0.5057 | 0.8032 | 0.6979 | 0.7294 | 0.5619 | 0.4820 |
| DeepMeSH5 | 0.5246 | 0.8085 | 0.7253 | 0.7482 | 0.5735 | 0.5059 |
| Optimize Micro AUC | 0.2413 | 0.4171 | 0.3015 | 0.3383 | 0.2961 | 0.2142 |
| Optimize Macro AUC | 0.1555 | 0.1607 | 0.2179 | 0.1782 | 0.1388 | 0.1869 |
+ Test batch 3, week 3
Annotated articles:4110/7206
Flat Measures
| System | MiF | EBP | EBR | EBF | MaP | MaR | MaF | MiP | MiR | Acc. |
|---|---|---|---|---|---|---|---|---|---|---|
| MTI First Line Index | 0.6142 | 0.6815 | 0.5802 | 0.6063 | 0.6469 | 0.5442 | 0.5289 | 0.6686 | 0.5680 | 0.4530 |
| Default MTI | 0.6299 | 0.6510 | 0.6339 | 0.6239 | 0.6130 | 0.5931 | 0.5580 | 0.6410 | 0.6193 | 0.4702 |
| auth1 | 0.6205 | 0.6142 | 0.6381 | 0.6118 | 0.6205 | 0.5225 | 0.5083 | 0.6160 | 0.6251 | 0.4554 |
| auth2 | 0.6273 | 0.6562 | 0.6101 | 0.6172 | 0.6497 | 0.4832 | 0.4765 | 0.6586 | 0.5989 | 0.4621 |
| auth3 | 0.6337 | 0.6234 | 0.6551 | 0.6251 | 0.6182 | 0.5408 | 0.5223 | 0.6259 | 0.6416 | 0.4694 |
| auth4 | 0.6315 | 0.6368 | 0.6381 | 0.6232 | 0.6183 | 0.5407 | 0.5224 | 0.6393 | 0.6239 | 0.4679 |
| auth5 | 0.5969 | 0.7539 | 0.5043 | 0.5825 | 0.7554 | 0.3922 | 0.4206 | 0.7529 | 0.4944 | 0.4300 |
| iria-1 | 0.4872 | 0.4372 | 0.5551 | 0.4781 | 0.4168 | 0.4022 | 0.3682 | 0.4419 | 0.5429 | 0.3265 |
| iria-2 | 0.5259 | 0.4733 | 0.6002 | 0.5174 | 0.4643 | 0.4769 | 0.4345 | 0.4768 | 0.5862 | 0.3616 |
| DeepMeSH1 | 0.6610 | 0.7261 | 0.6254 | 0.6549 | 0.6900 | 0.5372 | 0.5381 | 0.7185 | 0.6119 | 0.5036 |
| DeepMeSH2 | 0.6583 | 0.7237 | 0.6219 | 0.6519 | 0.6894 | 0.5324 | 0.5341 | 0.7168 | 0.6086 | 0.5002 |
| DeepMeSH3 | 0.6475 | 0.7091 | 0.6131 | 0.6407 | 0.6737 | 0.5091 | 0.5092 | 0.7033 | 0.6000 | 0.4872 |
| DeepMeSH4 | 0.6405 | 0.7003 | 0.6058 | 0.6323 | 0.6596 | 0.4902 | 0.4919 | 0.6960 | 0.5932 | 0.4786 |
| DeepMeSH5 | 0.6601 | 0.7084 | 0.6363 | 0.6541 | 0.6726 | 0.5491 | 0.5436 | 0.7046 | 0.6209 | 0.5021 |
| Optimize Micro AUC | 0.2491 | 0.2462 | 0.2441 | 0.2392 | 0.2237 | 0.0028 | 0.0015 | 0.2462 | 0.2521 | 0.1466 |
| Optimize Macro AUC | 0.0111 | 0.0110 | 0.0120 | 0.0111 | 0.1007 | 0.0263 | 0.0158 | 0.0110 | 0.0113 | 0.0058 |
| Optimize Combo AUC | 0.2435 | 0.2407 | 0.2392 | 0.2340 | 0.1599 | 0.0029 | 0.0016 | 0.2407 | 0.2464 | 0.1426 |
Hierarchical Measures
| System | LCA-F | HiP | HiR | HiF | LCA-P | LCA-R |
|---|---|---|---|---|---|---|
| MTI First Line Index | 0.4910 | 0.7986 | 0.6893 | 0.7201 | 0.5500 | 0.4690 |
| Default MTI | 0.5082 | 0.7701 | 0.7386 | 0.7363 | 0.5340 | 0.5113 |
| auth1 | 0.5018 | 0.7443 | 0.7441 | 0.7291 | 0.5162 | 0.5114 |
| auth2 | 0.5010 | 0.7811 | 0.7087 | 0.7272 | 0.5413 | 0.4884 |
| auth3 | 0.5129 | 0.7511 | 0.7569 | 0.7395 | 0.5251 | 0.5238 |
| auth4 | 0.5103 | 0.7585 | 0.7493 | 0.7391 | 0.5274 | 0.5165 |
| auth5 | 0.4566 | 0.8593 | 0.5831 | 0.6732 | 0.5860 | 0.3951 |
| iria-1 | 0.4212 | 0.6004 | 0.6936 | 0.6296 | 0.4059 | 0.4598 |
| iria-2 | 0.4448 | 0.6311 | 0.7313 | 0.6634 | 0.4286 | 0.4857 |
| DeepMeSH1 | 0.5242 | 0.8287 | 0.7160 | 0.7515 | 0.5825 | 0.4993 |
| DeepMeSH2 | 0.5223 | 0.8270 | 0.7133 | 0.7492 | 0.5805 | 0.4973 |
| DeepMeSH3 | 0.5138 | 0.8171 | 0.7061 | 0.7408 | 0.5716 | 0.4887 |
| DeepMeSH4 | 0.5086 | 0.8126 | 0.7011 | 0.7358 | 0.5677 | 0.4833 |
| DeepMeSH5 | 0.5250 | 0.8161 | 0.7274 | 0.7532 | 0.5719 | 0.5075 |
| Optimize Micro AUC | 0.2376 | 0.4296 | 0.2948 | 0.3388 | 0.2887 | 0.2111 |
| Optimize Macro AUC | 0.1422 | 0.1588 | 0.2219 | 0.1793 | 0.1238 | 0.1756 |
| Optimize Combo AUC | 0.2423 | 0.4017 | 0.3085 | 0.3386 | 0.2823 | 0.2220 |
+ Test batch 3, week 4
Annotated articles:3569/7955
Flat Measures
| System | MiF | EBP | EBR | EBF | MaP | MaR | MaF | MiP | MiR | Acc. |
|---|---|---|---|---|---|---|---|---|---|---|
| MTI First Line Index | 0.6392 | 0.6854 | 0.6503 | 0.6439 | 0.6139 | 0.5691 | 0.5367 | 0.6663 | 0.6141 | 0.4975 |
| Default MTI | 0.6410 | 0.6378 | 0.6982 | 0.6438 | 0.5758 | 0.6117 | 0.5578 | 0.6242 | 0.6588 | 0.4924 |
| auth1 | 0.6283 | 0.6048 | 0.6779 | 0.6231 | 0.5864 | 0.5310 | 0.5049 | 0.6064 | 0.6520 | 0.4675 |
| auth2 | 0.6329 | 0.6412 | 0.6473 | 0.6267 | 0.6098 | 0.4886 | 0.4721 | 0.6425 | 0.6235 | 0.4725 |
| auth3 | 0.6398 | 0.6127 | 0.6908 | 0.6339 | 0.5841 | 0.5501 | 0.5201 | 0.6156 | 0.6660 | 0.4787 |
| auth4 | 0.6199 | 0.7528 | 0.5476 | 0.6118 | 0.7243 | 0.4039 | 0.4260 | 0.7500 | 0.5283 | 0.4614 |
| auth5 | 0.6388 | 0.6245 | 0.6761 | 0.6333 | 0.5842 | 0.5500 | 0.5201 | 0.6273 | 0.6507 | 0.4783 |
| iria-1 | 0.5023 | 0.4397 | 0.5991 | 0.4938 | 0.4000 | 0.4150 | 0.3713 | 0.4449 | 0.5767 | 0.3410 |
| iria-2 | 0.5371 | 0.4714 | 0.6457 | 0.5306 | 0.4367 | 0.4927 | 0.4370 | 0.4755 | 0.6172 | 0.3739 |
| Search system 1 | 0.2857 | 0.2731 | 0.3438 | 0.2889 | 0.3888 | 0.4210 | 0.3497 | 0.2579 | 0.3203 | 0.1764 |
| Search system 2 | 0.2712 | 0.2485 | 0.3488 | 0.2751 | 0.3714 | 0.4261 | 0.3460 | 0.2326 | 0.3253 | 0.1662 |
| Search system 3 | 0.2173 | 0.2931 | 0.1957 | 0.2169 | 0.3732 | 0.2433 | 0.2431 | 0.2886 | 0.1742 | 0.1301 |
| Search system 4 | 0.2487 | 0.2094 | 0.3961 | 0.2580 | 0.2631 | 0.4893 | 0.3687 | 0.1860 | 0.3749 | 0.1533 |
| Search system 5 | 0.2609 | 0.2286 | 0.3665 | 0.2669 | 0.2809 | 0.4554 | 0.3612 | 0.2093 | 0.3463 | 0.1598 |
| DeepMeSH1 | 0.6798 | 0.7139 | 0.6844 | 0.6794 | 0.6573 | 0.5591 | 0.5459 | 0.7053 | 0.6560 | 0.5326 |
| DeepMeSH2 | 0.6768 | 0.7120 | 0.6804 | 0.6764 | 0.6519 | 0.5545 | 0.5407 | 0.7029 | 0.6526 | 0.5292 |
| DeepMeSH3 | 0.6657 | 0.6967 | 0.6681 | 0.6628 | 0.6366 | 0.5237 | 0.5114 | 0.6895 | 0.6434 | 0.5129 |
| DeepMeSH4 | 0.6657 | 0.6967 | 0.6681 | 0.6628 | 0.6366 | 0.5237 | 0.5114 | 0.6895 | 0.6434 | 0.5129 |
| DeepMeSH5 | 0.6751 | 0.6964 | 0.6915 | 0.6748 | 0.6399 | 0.5686 | 0.5475 | 0.6907 | 0.6602 | 0.5265 |
| Optimize Micro AUC | 0.2432 | 0.2354 | 0.2388 | 0.2288 | 0.2372 | 0.0032 | 0.0018 | 0.2354 | 0.2514 | 0.1385 |
| Optimize Macro AUC | 0.0093 | 0.0090 | 0.0111 | 0.0095 | 0.0534 | 0.0158 | 0.0077 | 0.0090 | 0.0096 | 0.0050 |
| Optimize Combo AUC | 0.2424 | 0.2347 | 0.2386 | 0.2284 | 0.2315 | 0.0035 | 0.0023 | 0.2347 | 0.2506 | 0.1382 |
Hierarchical Measures
| System | LCA-F | HiP | HiR | HiF | LCA-P | LCA-R |
|---|---|---|---|---|---|---|
| MTI First Line Index | 0.5211 | 0.7897 | 0.7421 | 0.7426 | 0.5560 | 0.5224 |
| Default MTI | 0.5199 | 0.7518 | 0.7855 | 0.7477 | 0.5230 | 0.5504 |
| auth1 | 0.5045 | 0.7289 | 0.7722 | 0.7332 | 0.5037 | 0.5331 |
| auth2 | 0.5021 | 0.7608 | 0.7356 | 0.7297 | 0.5246 | 0.5094 |
| auth3 | 0.5127 | 0.7347 | 0.7821 | 0.7416 | 0.5107 | 0.5419 |
| auth4 | 0.4739 | 0.8535 | 0.6174 | 0.6942 | 0.5839 | 0.4224 |
| auth5 | 0.5123 | 0.7416 | 0.7761 | 0.7421 | 0.5135 | 0.5377 |
| iria-1 | 0.4277 | 0.5948 | 0.7208 | 0.6364 | 0.4021 | 0.4835 |
| iria-2 | 0.4477 | 0.6199 | 0.7601 | 0.6671 | 0.4191 | 0.5100 |
| Search system 1 | 0.3003 | 0.4995 | 0.5672 | 0.5089 | 0.2880 | 0.3480 |
| Search system 2 | 0.2964 | 0.4847 | 0.5727 | 0.5028 | 0.2784 | 0.3525 |
| Search system 3 | 0.2605 | 0.5613 | 0.3917 | 0.4318 | 0.3360 | 0.2374 |
| Search system 4 | 0.2815 | 0.4198 | 0.6313 | 0.4821 | 0.2385 | 0.3917 |
| Search system 5 | 0.2852 | 0.4386 | 0.6116 | 0.4895 | 0.2496 | 0.3749 |
| DeepMeSH1 | 0.5435 | 0.8120 | 0.7632 | 0.7687 | 0.5755 | 0.5427 |
| DeepMeSH2 | 0.5411 | 0.8103 | 0.7596 | 0.7657 | 0.5731 | 0.5403 |
| DeepMeSH3 | 0.5290 | 0.8027 | 0.7506 | 0.7575 | 0.5617 | 0.5277 |
| DeepMeSH4 | 0.5290 | 0.8027 | 0.7506 | 0.7575 | 0.5617 | 0.5277 |
| DeepMeSH5 | 0.5405 | 0.7991 | 0.7714 | 0.7670 | 0.5637 | 0.5473 |
| Optimize Micro AUC | 0.2327 | 0.4162 | 0.2869 | 0.3284 | 0.2805 | 0.2100 |
| Optimize Macro AUC | 0.1399 | 0.1548 | 0.2278 | 0.1780 | 0.1195 | 0.1792 |
| Optimize Combo AUC | 0.2390 | 0.4032 | 0.3075 | 0.3373 | 0.2794 | 0.2211 |
+ Test batch 3, week 5
Annotated articles:984/10225
Flat Measures
| System | MiF | EBP | EBR | EBF | MaP | MaR | MaF | MiP | MiR | Acc. |
|---|---|---|---|---|---|---|---|---|---|---|
| MTI First Line Index | 0.6030 | 0.6677 | 0.5631 | 0.5956 | 0.6054 | 0.5198 | 0.5044 | 0.6624 | 0.5534 | 0.4418 |
| Default MTI | 0.6209 | 0.6434 | 0.6167 | 0.6149 | 0.5770 | 0.5755 | 0.5461 | 0.6408 | 0.6021 | 0.4627 |
| auth1 | 0.6230 | 0.6168 | 0.6339 | 0.6121 | 0.5949 | 0.5205 | 0.5051 | 0.6225 | 0.6236 | 0.4556 |
| auth2 | 0.6281 | 0.6524 | 0.6036 | 0.6138 | 0.6306 | 0.4904 | 0.4801 | 0.6617 | 0.5979 | 0.4578 |
| auth3 | 0.6321 | 0.6203 | 0.6483 | 0.6208 | 0.5953 | 0.5391 | 0.5183 | 0.6277 | 0.6366 | 0.4646 |
| auth4 | 0.6057 | 0.7409 | 0.5082 | 0.5869 | 0.7468 | 0.3765 | 0.3949 | 0.7549 | 0.5057 | 0.4340 |
| auth5 | 0.6308 | 0.6345 | 0.6322 | 0.6202 | 0.5955 | 0.5390 | 0.5183 | 0.6419 | 0.6200 | 0.4637 |
| iria-1 | 0.4926 | 0.4497 | 0.5474 | 0.4821 | 0.3865 | 0.4044 | 0.3690 | 0.4553 | 0.5366 | 0.3316 |
| iria-2 | 0.5251 | 0.4799 | 0.5847 | 0.5146 | 0.4269 | 0.4679 | 0.4269 | 0.4853 | 0.5721 | 0.3598 |
| Search system 1 | 0.2681 | 0.2585 | 0.3027 | 0.2670 | 0.3819 | 0.3959 | 0.3475 | 0.2488 | 0.2907 | 0.1594 |
| Search system 2 | 0.2547 | 0.2345 | 0.3065 | 0.2544 | 0.3615 | 0.3999 | 0.3457 | 0.2244 | 0.2944 | 0.1505 |
| Search system 3 | 0.1898 | 0.2817 | 0.1588 | 0.1879 | 0.3569 | 0.2123 | 0.2145 | 0.2743 | 0.1451 | 0.1103 |
| Search system 4 | 0.2380 | 0.1988 | 0.3577 | 0.2428 | 0.2562 | 0.4621 | 0.3829 | 0.1817 | 0.3447 | 0.1422 |
| Search system 5 | 0.2500 | 0.2194 | 0.3315 | 0.2523 | 0.2746 | 0.4324 | 0.3707 | 0.2054 | 0.3194 | 0.1490 |
| DeepMeSH1 | 0.6561 | 0.7036 | 0.6251 | 0.6482 | 0.6582 | 0.5321 | 0.5257 | 0.7052 | 0.6135 | 0.4956 |
| DeepMeSH2 | 0.6539 | 0.7018 | 0.6219 | 0.6452 | 0.6550 | 0.5294 | 0.5239 | 0.7031 | 0.6111 | 0.4924 |
| DeepMeSH3 | 0.6413 | 0.6860 | 0.6114 | 0.6320 | 0.6347 | 0.5027 | 0.4969 | 0.6875 | 0.6008 | 0.4765 |
| DeepMeSH4 | 0.6354 | 0.6793 | 0.6047 | 0.6257 | 0.6288 | 0.4921 | 0.4870 | 0.6812 | 0.5953 | 0.4700 |
| DeepMeSH5 | 0.6531 | 0.6937 | 0.6273 | 0.6451 | 0.6431 | 0.5386 | 0.5296 | 0.6969 | 0.6145 | 0.4922 |
| Optimize Micro AUC | 0.2812 | 0.2890 | 0.2552 | 0.2641 | 0.2889 | 0.0058 | 0.0031 | 0.2890 | 0.2739 | 0.1646 |
| Optimize Macro AUC | 0.0060 | 0.0062 | 0.0059 | 0.0059 | 0.0282 | 0.0099 | 0.0056 | 0.0062 | 0.0059 | 0.0031 |
| Optimize Combo AUC | 0.2766 | 0.2842 | 0.2522 | 0.2602 | 0.1967 | 0.0061 | 0.0033 | 0.2842 | 0.2693 | 0.1610 |
Hierarchical Measures
| System | LCA-F | HiP | HiR | HiF | LCA-P | LCA-R |
|---|---|---|---|---|---|---|
| MTI First Line Index | 0.4826 | 0.7867 | 0.6718 | 0.7083 | 0.5419 | 0.4576 |
| Default MTI | 0.5056 | 0.7638 | 0.7244 | 0.7284 | 0.5340 | 0.5046 |
| auth1 | 0.4996 | 0.7440 | 0.7363 | 0.7262 | 0.5162 | 0.5056 |
| auth2 | 0.4971 | 0.7787 | 0.6979 | 0.7214 | 0.5402 | 0.4803 |
| auth3 | 0.5077 | 0.7508 | 0.7466 | 0.7340 | 0.5222 | 0.5163 |
| auth4 | 0.4558 | 0.8540 | 0.5810 | 0.6742 | 0.5845 | 0.3912 |
| auth5 | 0.5080 | 0.7589 | 0.7404 | 0.7352 | 0.5279 | 0.5110 |
| iria-1 | 0.4237 | 0.6116 | 0.6849 | 0.6317 | 0.4130 | 0.4570 |
| iria-2 | 0.4406 | 0.6337 | 0.7112 | 0.6557 | 0.4283 | 0.4769 |
| Search system 1 | 0.3034 | 0.5136 | 0.5351 | 0.5049 | 0.3000 | 0.3344 |
| Search system 2 | 0.2987 | 0.4959 | 0.5401 | 0.4978 | 0.2884 | 0.3383 |
| Search system 3 | 0.2512 | 0.5834 | 0.3461 | 0.4076 | 0.3485 | 0.2164 |
| Search system 4 | 0.2863 | 0.4311 | 0.6057 | 0.4839 | 0.2469 | 0.3810 |
| Search system 5 | 0.2903 | 0.4531 | 0.5849 | 0.4912 | 0.2599 | 0.3649 |
| DeepMeSH1 | 0.5211 | 0.8113 | 0.7186 | 0.7476 | 0.5732 | 0.4985 |
| DeepMeSH2 | 0.5180 | 0.8097 | 0.7141 | 0.7440 | 0.5721 | 0.4946 |
| DeepMeSH3 | 0.5076 | 0.7989 | 0.7070 | 0.7351 | 0.5581 | 0.4867 |
| DeepMeSH4 | 0.5025 | 0.7968 | 0.7016 | 0.7315 | 0.5537 | 0.4803 |
| DeepMeSH5 | 0.5201 | 0.8029 | 0.7219 | 0.7461 | 0.5662 | 0.5012 |
| Optimize Micro AUC | 0.2508 | 0.4733 | 0.3005 | 0.3565 | 0.3199 | 0.2161 |
| Optimize Macro AUC | 0.1370 | 0.1520 | 0.2009 | 0.1673 | 0.1213 | 0.1657 |
| Optimize Combo AUC | 0.2596 | 0.4473 | 0.3319 | 0.3682 | 0.3151 | 0.2326 |